L-Arabinose (Compound)

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ID	2082
Name	L-Arabinose
Synonyms	L-Arabinopyranose; Arabinose
Structure	MOL SDF 3D-SDF PDB SMILES InChI View 3D Structure Structure for EE002082 (L-Arabinose) 3D Structure for EE002082 (L-Arabinose) 439195 -OEChem-03112022103D 20 20 0 1 0 0 0 0 0999 V2000 0.7128 -1.5914 -0.0021 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.6955 1.7694 -0.0913 O 0 0 0 0 0 0 0 0 0 0 0 0 1.1544 2.0459 0.1891 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.8124 -0.8315 -1.0843 O 0 0 0 0 0 0 0 0 0 0 0 0 2.5955 -0.3126 -0.5221 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.8534 0.7648 0.4675 C 0 0 2 0 0 0 0 0 0 0 0 0 0.5194 0.8282 -0.2000 C 0 0 2 0 0 0 0 0 0 0 0 0 -1.4901 -0.6126 0.2901 C 0 0 2 0 0 0 0 0 0 0 0 0 1.3863 -0.3566 0.2344 C 0 0 1 0 0 0 0 0 0 0 0 0 -0.5171 -1.7035 0.7187 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.7569 0.9878 1.5375 H 0 0 0 0 0 0 0 0 0 0 0 0 0.4118 0.8578 -1.2912 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.4258 -0.6824 0.8551 H 0 0 0 0 0 0 0 0 0 0 0 0 1.6579 -0.2741 1.2944 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.3121 -1.6601 1.7945 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.9297 -2.6913 0.4891 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.2471 2.6243 0.0265 H 0 0 0 0 0 0 0 0 0 0 0 0 2.0369 2.0561 -0.2193 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.3982 -0.1069 -1.3629 H 0 0 0 0 0 0 0 0 0 0 0 0 3.2728 -0.7802 -0.0045 H 0 0 0 0 0 0 0 0 0 0 0 0 1 9 1 0 0 0 0 1 10 1 0 0 0 0 2 6 1 0 0 0 0 2 17 1 0 0 0 0 3 7 1 0 0 0 0 3 18 1 0 0 0 0 4 8 1 0 0 0 0 4 19 1 0 0 0 0 5 9 1 0 0 0 0 5 20 1 0 0 0 0 6 7 1 0 0 0 0 6 8 1 0 0 0 0 6 11 1 0 0 0 0 7 9 1 0 0 0 0 7 12 1 0 0 0 0 8 10 1 0 0 0 0 8 13 1 0 0 0 0 9 14 1 0 0 0 0 10 15 1 0 0 0 0 10 16 1 0 0 0 0 M END > <PUBCHEM_COMPOUND_CID> 439195 > <PUBCHEM_CONFORMER_RMSD> 0.4 > <PUBCHEM_CONFORMER_DIVERSEORDER> 1 2 4 3 5 6 > <PUBCHEM_MMFF94_PARTIAL_CHARGES> 14 1 -0.56 10 0.28 17 0.4 18 0.4 19 0.4 2 -0.68 20 0.4 3 -0.68 4 -0.68 5 -0.68 6 0.28 7 0.28 8 0.28 9 0.56 > <PUBCHEM_EFFECTIVE_ROTOR_COUNT> 1.2 > <PUBCHEM_PHARMACOPHORE_FEATURES> 10 1 1 acceptor 1 2 acceptor 1 2 donor 1 3 acceptor 1 3 donor 1 4 acceptor 1 4 donor 1 5 acceptor 1 5 donor 6 1 6 7 8 9 10 rings > <PUBCHEM_HEAVY_ATOM_COUNT> 10 > <PUBCHEM_ATOM_DEF_STEREO_COUNT> 3 > <PUBCHEM_ATOM_UDEF_STEREO_COUNT> 1 > <PUBCHEM_BOND_DEF_STEREO_COUNT> 0 > <PUBCHEM_BOND_UDEF_STEREO_COUNT> 0 > <PUBCHEM_ISOTOPIC_ATOM_COUNT> 0 > <PUBCHEM_COMPONENT_COUNT> 1 > <PUBCHEM_CACTVS_TAUTO_COUNT> 1 > <PUBCHEM_CONFORMER_ID> 0006B39B00000001 > <PUBCHEM_MMFF94_ENERGY> 21.6942 > <PUBCHEM_FEATURE_SELFOVERLAP> 50.812 > <PUBCHEM_SHAPE_FINGERPRINT> 12423570 1 10951776303947588334 16945 1 18410007758206788739 18185500 45 18122335787948806411 21040471 1 18193276282451979104 21922407 69 15839046214668236314 23552423 10 17899421067064007114 241688 4 18195240027383290626 2748010 2 17905614645848738410 29004967 10 17688880047758134913 5084963 1 18131072670525491610 > <PUBCHEM_SHAPE_MULTIPOLES> 176.45 2.43 1.99 0.79 0.74 0.43 -0.07 -0.04 -0.46 -0.14 0.21 -0.2 -0.14 0.06 > <PUBCHEM_SHAPE_SELFOVERLAP> 351.034 > <PUBCHEM_SHAPE_VOLUME> 102.3 > <PUBCHEM_COORDINATE_TYPE> 2 5 10 $$$$
Description
Classification	Compounds > Chemical entities > Organic compounds > Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Monosaccharides > Pentoses
CAS number	87-72-9
PubChem ID	439195
ChEBI ID	17535
FooDB ID	FDB012306
HMDB ID	HMDB0000646

Chemical data

MolDBi data

IUPAC Name	(3R,4S,5S)-oxane-2,3,4,5-tetrol
Traditional IUPAC Name	L-arabinopyranose
Formula	C5H10O5
InChI	InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4+,5?/m0/s1
InChI Key	SRBFZHDQGSBBOR-HWQSCIPKSA-N
Molecular weight	150.1299
Exact mass	150.05282343
SMILES	O[C@H]1COC(O)[C@H](O)[C@H]1O

ClassyFire Taxonomy

Description	belongs to the class of organic compounds known as pentoses. These are monosaccharides in which the carbohydrate moiety contains five carbon atoms.
Kingdom	Organic compounds
Super Class	Organic oxygen compounds
Class	Organooxygen compounds
Sub Class	Carbohydrates and carbohydrate conjugates
Direct Parent	Pentoses
Alternative Parents	Oxanes Secondary alcohols Hemiacetals Polyols Oxacyclic compounds Hydrocarbon derivatives

Publications with L-Arabinose

ID	Title	First author	Authors	Year	Journal	Volume	Issue	Pages	PubMed ID	DOI	Study design	No. of Biomarkers	No. of Intake values	No. of Concentration values	No. of Reproducibility values	No. of Correlation values	No. of Metabolomic associations	No. of Microbiota associations	No. of Cancer associations

Biomarker data

Measurements of L-Arabinose in biospecimens

Concentration values

ID	Parent ID	Depth	Subject group	Population	Country	Cohort	Biomarker Time definition	Biospecimen	Analytical method	Biomarker	Biomarker detail	Measurement size	Detected (nb)	Detected (%)	Detected only?	Arithmethic mean	Arithmethic SD	Geometric mean	Geometric SD	Min	Min (detected)	Percentile_05	Percentile_10	Percentile_25	Median	Percentile_75	Percentile_90	Percentile_95	Max	Interquartile range	Mean 95% CI lower	Mean 95% CI upper	GMean 95% CI lower	GMean 95% CI upper	Unit	Converted arithmetic mean	Converted geometric mean	Converted median	Converted unit	Adjustment type	Adjusted on	Regressed on	Expressed as	Publication

Reproducibility values

ID	Excretion ID	Subject group	Population	Country	Cohort	Biomarker Time definition	Biospecimen	Analytical method	Biomarker	Biomarker detail	Arithmetic mean	Geometric mean	Median	Unit	Adjusted on	Reproducibility size	ICC	ICC 95% CI lower	ICC 95% CI upper	CV% WS	CV% BS	VAR WS	VAR BS	Publication

Associations of L-Arabinose with exposures

Correlation values

ID	Intake ID	Excretion ID	Subject group	Population	Country	Cohort	Intake Time definition	Intake Assessment method	Intake	Intake detail	Supplement intakes included?	Intake Arithmetic mean	Intake Geometric mean	Intake Median	Intake Unit	Intake Adjusted on	Biomarker Time definition	Biospecimen	Analytical method	Biomarker	Biomarker detail	Biomarker Arithmetic mean	Biomarker Geometric mean	Biomarker Median	Biomarker Unit	Biomarker Adjusted on	Correlation size	Correlation type	Correlation value	Correlation 95% CI lower	Correlation 95% CI upper	Correlation p-value	Significant?	Measurement adjustment	Deattenuated?	Covariates	Publication

Metabolomic associations

ID	Intake ID	Excretion ID	Subject group	Population	Country	Cohort	No. of subjects	Intake Assessment method	Intake	Intervention dose	Biospecimen	Analytical method	Biomarker	Structural identification	Feature selection	Area under curve	Sensitivity	Specificity	PLS-DA VIP	Beta coefficient	Beta coefficient p-value	ANOVA p-value	Publication

Microbiota associations

ID	Biomarker	Experimental evidence	Organism	Biospecimen	Antibiotic	Bacterial source	Substrate	Publication

Associations of L-Arabinose with cancer risk

Cancer associations

ID	Excretion ID	Subject group	Population	Country	Cohort	No. of subjects	No. of cases	No. of controls	Biospecimen	Analytical method	Biomarker	Biomarker detail	Cancer	Study design	Publication

Exposure data

Measurements of L-Arabinose exposures in populations

Intake values

ID	Parent ID	Depth	Subject group	Population	Country	Cohort	Intake Time definition	Intake assessment tool	Intake food coverage	Intake time coverage	Intake Assessment method	Intake	Intake detail	Food description	Supplement intakes included?	Measurement size	Detected (nb)	Detected (%)	Detected only?	Arithmethic mean	Arithmethic SD	Geometric mean	Geometric SD	Min	Min (detected)	Percentile_05	Percentile_10	Percentile_25	Median	Percentile_75	Percentile_90	Percentile_95	Max	Interquartile range	Mean 95% CI lower	Mean 95% CI upper	GMean 95% CI lower	GMean 95% CI upper	Unit	Converted arithmetic mean	Converted geometric mean	Converted median	Converted unit	Adjustment type	Adjusted on	Regressed on	Expressed as	Publication

Associations of L-Arabinose exposures with biomarkers

Correlation values

ID	Intake ID	Excretion ID	Subject group	Population	Country	Cohort	Intake Time definition	Intake Assessment method	Intake	Intake detail	Supplement intakes included?	Intake Arithmetic mean	Intake Geometric mean	Intake Median	Intake Unit	Intake Adjusted on	Biomarker Time definition	Biospecimen	Analytical method	Biomarker	Biomarker detail	Biomarker Arithmetic mean	Biomarker Geometric mean	Biomarker Median	Biomarker Unit	Biomarker Adjusted on	Correlation size	Correlation type	Correlation value	Correlation 95% CI lower	Correlation 95% CI upper	Correlation p-value	Significant?	Measurement adjustment	Deattenuated?	Covariates	Publication