Exposome-Explorer: show components

5-cis-Lycopene

ID	279
Name	5-cis-Lycopene
Synonyms
Structure	MOL SDF PDB SMILES InChI Structure for EE000279 (5-cis-Lycopene) 3D Structure for EE000279 (5-cis-Lycopene) Mrv1572011201512022D 40 39 0 0 0 0 999 V2000 4.9500 -15.7184 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5375 -15.0039 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9500 -14.2894 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5375 -13.5749 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9500 -12.8605 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5375 -12.1460 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9500 -11.4315 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5375 -10.7171 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9500 -10.0026 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5375 -9.2881 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9500 -8.5737 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5375 -7.8592 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9500 -7.1447 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5375 -6.4302 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9500 -5.7158 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5375 -5.0013 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9500 -4.2868 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5375 -3.5724 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9500 -2.8579 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 5.7750 -2.8579 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5375 -2.1434 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9500 -1.4289 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5375 -0.7145 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9500 -0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 5.7750 -0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5375 0.7145 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.7125 0.7145 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.3000 1.4289 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.4750 1.4289 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.0625 2.1434 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.0625 0.7145 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.2375 0.7145 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.8250 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.4125 -0.7145 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.4125 0.7145 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.7125 -6.4302 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.7125 -9.2881 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.7125 -12.1460 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.7125 -15.0039 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 2 3 2 0 0 0 0 3 4 1 0 0 0 0 4 5 1 0 0 0 0 5 6 1 0 0 0 0 6 7 2 0 0 0 0 7 8 1 0 0 0 0 8 9 2 0 0 0 0 9 10 1 0 0 0 0 10 11 2 0 0 0 0 11 12 1 0 0 0 0 12 13 2 0 0 0 0 13 14 1 0 0 0 0 14 15 2 0 0 0 0 15 16 1 0 0 0 0 16 17 2 0 0 0 0 17 18 1 0 0 0 0 18 19 2 0 0 0 0 19 20 1 0 0 0 0 19 21 1 0 0 0 0 21 22 2 0 0 0 0 22 23 1 0 0 0 0 23 24 2 0 0 0 0 24 25 1 0 0 0 0 24 26 1 0 0 0 0 26 27 2 0 0 0 0 27 28 1 0 0 0 0 28 29 2 0 0 0 0 29 30 1 0 0 0 0 29 31 1 0 0 0 0 31 32 1 0 0 0 0 32 33 1 0 0 0 0 33 34 2 0 0 0 0 34 35 1 0 0 0 0 34 36 1 0 0 0 0 14 37 1 0 0 0 0 10 38 1 0 0 0 0 6 39 1 0 0 0 0 2 40 1 0 0 0 0 M END > <DATABASE_ID> EE000279 > <DATABASE_NAME> test > <SMILES> CC(C)=CCC\C(C)=C/C=C/C(/C)=C/C=C/C(/C)=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C=C(\C)CCC=C(C)C > <INCHI_IDENTIFIER> InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3/b12-11+,25-15+,26-16+,31-17+,32-18+,35-21+,36-22+,37-27-,38-28+,39-29+,40-30+ > <INCHI_KEY> OAIJSZIZWZSQBC-IKZLVQEUSA-N > <FORMULA> C40H56 > <MOLECULAR_WEIGHT> 536.888 > <EXACT_MASS> 536.438201803 > <JCHEM_ACCEPTOR_COUNT> 0 > <JCHEM_ATOM_COUNT> 96 > <JCHEM_AVERAGE_POLARIZABILITY> 72.3009878615488 > <JCHEM_BIOAVAILABILITY> 0 > <JCHEM_DONOR_COUNT> 0 > <JCHEM_FORMAL_CHARGE> 0 > <JCHEM_GHOSE_FILTER> 0 > <JCHEM_IUPAC> (6Z,8E,10E,12E,14E,16E,18E,20E,22E,24E,26E)-2,6,10,14,19,23,27,31-octamethyldotriaconta-2,6,8,10,12,14,16,18,20,22,24,26,30-tridecaene > <ALOGPS_LOGP> 9.16 > <JCHEM_LOGP> 11.931831819333333 > <ALOGPS_LOGS> -6.13 > <JCHEM_MDDR_LIKE_RULE> 0 > <JCHEM_NUMBER_OF_RINGS> 0 > <JCHEM_PHYSIOLOGICAL_CHARGE> 0 > <JCHEM_POLAR_SURFACE_AREA> 0.0 > <JCHEM_REFRACTIVITY> 197.8060000000001 > <JCHEM_ROTATABLE_BOND_COUNT> 16 > <JCHEM_RULE_OF_FIVE> 0 > <ALOGPS_SOLUBILITY> 3.97e-04 g/l > <JCHEM_TRADITIONAL_IUPAC> (6Z,8E,10E,12E,14E,16E,18E,20E,22E,24E,26E)-2,6,10,14,19,23,27,31-octamethyldotriaconta-2,6,8,10,12,14,16,18,20,22,24,26,30-tridecaene > <JCHEM_VEBER_RULE> 0 $$$$
Description
Classification	DIET > Carotenoids > Carotenes
CAS number	101468-86-4
PubChem ID	11756979
ChEBI ID
FooDB ID
HMDB ID

Biomarker measurements

Biomarkers
Biospecimens
Analytical methods
Cohorts
Publications

Title	First author	Year
Site-specific concentrations of carotenoids in adipose tissue: relations with dietary and serum carotenoid concentrations in healthy adults	Chung	2009

Analytical method
HPLC

Biospecimen
Serum, fasting
Adipose tissue, abdomen
Adipose tissue, buttocks
Adipose tissue, thigh

Cohort

Biomarker
5-cis-Lycopene

Biomarker concentration values

ID	Parent ID	Depth	Subject group	Population	Country	Country code	Cohort	Biomarker Time definition	Biospecimen	Analytical method	Biomarker	Biomarker detail	Measurement size	Detected (nb)	Detected (%)	Detected only?	Arithmethic mean	Arithmethic SD	Geometric mean	Geometric SD	Min	Min (detected)	Percentile_05	Percentile_10	Percentile_25	Median	Percentile_75	Percentile_90	Percentile_95	Max	Interquartile range	Mean 95% CI lower	Mean 95% CI upper	GMean 95% CI lower	GMean 95% CI upper	Unit	Converted arithmetic mean	Converted geometric mean	Converted median	Converted unit	Adjustment type	Adjusted on	Regressed on	Expressed as	Publication

Intake values

No data available

Correlation values

5-cis-Lycopene intakes correlated with excretions
5-cis-Lycopene excretions correlated with intakes

ID	Intake ID	Excretion ID	Subject group	Population	Country	Country code	Cohort	Intake Time definition	Intake Assessment	Intake	Intake detail	Supplement intakes included?	Intake Arithmetic mean	Intake Geometric mean	Intake Median	Intake Unit	Intake Adjusted on	Biomarker Time definition	Biospecimen	Analytical method	Biomarker	Biomarker detail	Biomarker Arithmetic mean	Biomarker Geometric mean	Biomarker Median	Biomarker Unit	Biomarker Adjusted on	Correlation size	Correlation type	Correlation value	Correlation 95% CI lower	Correlation 95% CI upper	Correlation p-value	Significant?	Measurement adjustment	Deattenuated?	Covariates	Publication

ID	Intake ID	Excretion ID	Subject group	Population	Country	Country code	Cohort	Intake Time definition	Intake Assessment	Intake	Intake detail	Supplement intakes included?	Intake Arithmetic mean	Intake Geometric mean	Intake Median	Intake Unit	Intake Adjusted on	Biomarker Time definition	Biospecimen	Analytical method	Biomarker	Biomarker detail	Biomarker Arithmetic mean	Biomarker Geometric mean	Biomarker Median	Biomarker Unit	Biomarker Adjusted on	Correlation size	Correlation type	Correlation value	Correlation 95% CI lower	Correlation 95% CI upper	Correlation p-value	Significant?	Measurement adjustment	Deattenuated?	Covariates	Publication

Reproducibility values

No data available